Bioinformatics
- genomic.social Madelaine (@mmarchin@genomic.social)
Calling everyone who works in or with a #bioinformatics core facility - we need your help! We’d like to hear your ideas on what skills core facility scientists need at different levels (I, II, III or manager). Interested in helping? Please fill in this survey by September 30th. https://docs.google.c...
Calling everyone who works in or with a #bioinformatics core facility - we need your help! We’d like to hear your ideas on what skills core facility scientists need at different levels (I, II, III or manager). Interested in helping? Please fill in this survey by September 30th. https://docs.google.com/forms/d/e/1FAIpQLSf2P_d6nX6JmhFJtcBNX3zOQB-DuAuOMiIDc7t57tZVM4POog/viewform
The results of this survey will feed into the bioinformatics core facility competency framework. Find out more: https://sites.google.com/ebi.ac.uk/bioinfocore-competencies/
2024 Galaxy Community Conference
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GCC 2024 will be held from June 24th–29th in Brno, Czech Republic! See you there! #UseGalaxy2024
For more information, please visit: https://galaxyproject.org/events/gcc2024/
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Maria Nattestad just dropped a new introduction to the field of bioinformatics.
Foundation skills for bioinformatics:
- Python
- Use the Command Line (e.g. Bash, scripts)
- Statistics - p-values, multiple hypothesis tests
I've used Rosalind in the past to learn about bioinformatics. I solved about 17 of the problems, which is about 6% of the problems on the site.
I think it gave a decent mix of guided learning and letting you figure things out on your own. I would say having some background knowledge in biology and coding would be necessary. It doesn't do a lot of hand holding, but there is some.
- bmcbioinformatics.biomedcentral.com ggcoverage: an R package to visualize and annotate genome coverage for various NGS data - BMC Bioinformatics
Background Visualizing genome coverage is of vital importance to inspect and interpret various next-generation sequencing (NGS) data. Besides genome coverage, genome annotations are also crucial in the visualization. While different NGS data require different annotations, how to visualize genome cov...
This post is a 'game' proposal. Reply with your favorite tool, if yours has been posted already, just upvote the comment.
Feel like in need of some inspiration? check tou https://github.com/topics/bioinformatics ;)
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